Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLLLLAALLTAGVTAHSISTRAVWQFRNMIKCTIPGSDPLREYNNYGCYCGLGGSGTPVDDLDRCCQTHDHCYNQAKKLESCKFLIDNPYTNTYSYKCSGNVITCSDKNNDCESFICNCDRQAAICFSKVPYNKEYKDLDTKKHC
1Y6O Chain:B ((1-124))
----------------------ALWQFRSLIKCAIPGSHPLLDFNNYGCYCGLGGSGTPVDELDRCCETHDCCYRDAKNLDSCKFLVDNPYTESYSYSCSNTEITCNSKNNACEAFICNCDRNAAICFSKAPYNKEHKNLDTKKYC
General information:
TITO was launched using:
RESULT:
Template:
1Y6O.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -57326 for 932 contacts (-61.5/contact) +
2D Compatibility (PS) -12910 + (NN) -5435 + (LL) 2372
1D Compatibility (HY) -15600 + (ID) 4650
Total energy: -93549.0 ( -100.37 by residue)
QMean score : 0.430
(partial model without unconserved sides chains):
PDB file :
Tito_1Y6O.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Y6O-query.scw
PDB file :
Tito_Scwrl_1Y6O.pdb
: