Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKVLLLLAASIMAFGSIQVQGNIAQFGEMIRLKTGKRAELSYAFYGCHCGLGGKGSPKDATDRCCVTHDCCYKSLEK-SGCGTKLLKYKYSHQGGQITCSANQNSCQKRLCQCDKAAAECFARNKKTYSLKYQFYPNMF-CKGKKPKC
3JQL Chain:A ((1-119))
---------------------NLYQFKNMIQCTVPSRSWADFADYGCYCGKGGSGTPVDDLDRCCQTHDNCYNEAENISGCRPYFKTYSYECTQGTLTCKGDNNACAASVCDCDRLAAICFAGA--PYNDANYNIDLKARCN------
General information:
TITO was launched using:
RESULT:
Template:
3JQL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -39497 for 855 contacts (-46.2/contact) +
2D Compatibility (PS) -12601 + (NN) -5210 + (LL) 2444
1D Compatibility (HY) -6400 + (ID) 2350
Total energy: -63614.0 ( -74.40 by residue)
QMean score : 0.307
(partial model without unconserved sides chains):
PDB file :
Tito_3JQL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3JQL-query.scw
PDB file :
Tito_Scwrl_3JQL.pdb
: