Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MPLSRWLRSVGVFLLPAPYWAPRERWLGSLRRPSLVHGYPVLAWHSARCWCQAWTEEPRALCSSLRMNGDQNSDVYAQEKQDFVQHFSQIVRVLTEDEM-GHPEIGDAIARLKEVLEYNAIGGKYNRGLTVVVAFRELVEPRKQD-----ADSLQRAWTVGWCVELLQAFFLVADDIMDSSLTRRGQICWYQKPGVGL-DAINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQTLDLLT-----------APQGNVDLVRFTEKRYKSIVKYKTAFYSFYLPIAAAMYMAGIDGEKEHANAKKILLEMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRATPEQYQILKENYGQKEAEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIEQYAAP--LPPAVFLGLARKIYKRRK |
| 3DYH Chain:A ((25-390)) | ------------------------------------------------------------------------------PMQMFMQVYDEIQMFLLEELELKFDMDPNRVRYLRKMMDTTCLGGKYNRGLTVIDVAESLLSL----DGARRKRVLHDACVCGWMIEFLQAHYLVEDDIMDNSVTRRGKPCWYRHPDVTVQCAINDGLLLKSWTHMMAMHFFADRPFLQDLLCRFNRVDYTTAVGQLYDVTSMFDSNKLDPDVSQPTTTDFAEFTLSNYKRIVKYKTAYYTYLLPLVMGLIVSEALPTVDMGVTEELAMLMGEYFQVQDDVMDCFTPPERLGKVGTDIQDAKCSWLAVTFLAKASSAQVAEFKANYGSGDSEKVATVRRLYEEADLQGDYVAYEAAVAEQVKELIEKLRLCSPGFAASVETLWGKTYKRQK |
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General information:
TITO was launched using:
| RESULT:
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Template: 3DYH.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -187263 for 2733 contacts (-68.5/contact) +
2D Compatibility (PS) -36667 + (NN) -22071 + (LL) 5372
1D Compatibility (HY) -28800 + (ID) 6350
Total energy: -275779.0 ( -100.91 by residue)
QMean score : 0.384
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