Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MADPRPDPDELARRAAQVIADRTGIGEHDVAVVLGSGWLPAVAALGSPTTVLPQAELPGFVPPTAAGHAGELLSVPIGAHRVLVLAGRIHAYEGHDLRYVVHPVRAARAAGAQIMVLTNAAGGLRADLQVGQPVLISDHLNL-TARSPLVG-------GEFVDLTDAYSPRLRELA----RQSDPQLAEGVYAGLPGPHYETPAEIRMLQTLGADLVGMSTVHETIAARAAGAEVLGVSLVTNLAAGITGEPLSHAEVLAAGAASATRMGALLADVIARF
4LNA Chain:A ((23-293))
-------MFEQIQETTQFIQSKIT-LRPAIGIILGTGLGALTNELDIDT-TIPYETIPHFPLSTV---SGKLLIGTLGGKSVVVMQGRFHYYEGYTMQQVTYPVRVMHALGIQTLLVSNAAGGMNPTFQTSDLMVIDDHISLLLPQNPLICPNPPIFGDRFPDMSEPYRKSLIDLAFSVAAELDIPLKRGVYVSVTGPQLETRAEYRMLRQWGADAVGMSTVPEVIVANQLGMDVFGISVITDLCFPDTLEKAELVKILATAAQAEPKLTMLIREMIGRL
General information:
TITO was launched using:
RESULT:
Template:
4LNA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -167320 for 2138 contacts (-78.3/contact) +
2D Compatibility (PS) -28070 + (NN) -12856 + (LL) 292
1D Compatibility (HY) -21200 + (ID) 4450
Total energy: -233604.0 ( -109.26 by residue)
QMean score : 0.642
(partial model without unconserved sides chains):
PDB file :
Tito_4LNA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LNA-query.scw
PDB file :
Tito_Scwrl_4LNA.pdb
: