Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MERPQPDSMPQDLSEALKEATKEVHTQAENAEFMRNFQKGQVTRDGFKLVMASLYHIYVALEEEIERNKESPVFAPVYFPEELHRKAALEQDLAFWYGPRWQEVIPYTPAMQRYVKRLHEVGRTEPELLVAHAYTRYLGDLSGGQVLKKIAQKALDLPSSGEGLAFFTFPNIASATKFKQLYRSRMNSLEMTPAVRQRVIEEAKTAFLLNIQLFEELQELLTHDTKDQSPSRAPGLRQRASNKVQDSAPVETPRGKPPLNTRSQAPLLRWVLTLSFLVATVAVGLYAM
4G8P Chain:A ((11-223))
----------QDLSEALKEATKEVHIRAENSEFMRNFQKGQVSREGFKLVMASLYHIYTALEEEIERNKQNPVYAPLYFPEELHRRAALEQDMAFWYGPHWQEAIPYTPATQHYVKRLHEVGGTHPELLVAHAYTRYLGDLSGGQVLKKIAQKAMALPSSGEGLAFFTFPSIDNPTKFKQLYRARMNTLEMTPEVKHRVTEEAKTAFLLNIELFEELQALLTE-----------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4G8P.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -105649 for 1674 contacts (-63.1/contact) +
2D Compatibility (PS) -23448 + (NN) -20963 + (LL) 3956
1D Compatibility (HY) -26000 + (ID) 9000
Total energy: -181104.0 ( -108.19 by residue)
QMean score : 0.638
(partial model without unconserved sides chains):
PDB file :
Tito_4G8P.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4G8P-query.scw
PDB file :
Tito_Scwrl_4G8P.pdb
: