Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
YSLFPNSPKWTSKVVTYRIVSYTRDLPHITVDRLVSKALNMWGKEIPLHFRKVVWGTADIMIGFARGAHGDSYPFDGPGNTLAHAFAPGTGLGGDAHFDEDERWTDGSSLGINFLYAATHELGHSLGMGHSSDPNAVMYPTYGNGDPQNFKLSQDDIKGIQKLYGKRSNSRKK
1HV5 Chain:A ((7-162))
-------GRWEKTDLTYRILRFPWQLVREQVRQTVAEALQVWSEVTPLTFTEVHEGRADIMIDFARYWHGDNLPFDGPGGILAHAFFPKTHREGDVHFDYDETWTIGDNQGTDLLQVAAHEFGHVLGLQHTTAAKALMSPFYTFR--YPLSLSPDDRRGIQHLYG--------
General information:
TITO was launched using:
RESULT:
Template:
1HV5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -61428 for 1135 contacts (-54.1/contact) +
2D Compatibility (PS) -16812 + (NN) -11875 + (LL) 164
1D Compatibility (HY) -10400 + (ID) 3700
Total energy: -104051.0 ( -91.67 by residue)
QMean score : 0.730
(partial model without unconserved sides chains):
PDB file :
Tito_1HV5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1HV5-query.scw
PDB file :
Tito_Scwrl_1HV5.pdb
: