Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MATPPKRSCPSFSASSEGTRIKKISIEGNIAAGKSTFVNILKQLCEDWEVVPEPVARWCNVQSTQDEFEELTMSQKNGGNVLQMMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFASNLYESECMNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQATPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNEDFKDKYESLVEKVKEFLSTL
4JLK Chain:B ((39-280))
------------------TRIKKISIEGNIAAGKSTFVNILKQLSEDWEVVPEPVARWSNV---------LTMEQKNGGNVLQMMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFASNLYESESMNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQATPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNEDFKDKYESLVEKVKEFLSTL
General information:
TITO was launched using:
RESULT:
Template:
4JLK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -118130 for 1826 contacts (-64.7/contact) +
2D Compatibility (PS) -24344 + (NN) -4463 + (LL) 904
1D Compatibility (HY) -34000 + (ID) 11450
Total energy: -191483.0 ( -104.86 by residue)
QMean score : 0.596
(partial model without unconserved sides chains):
PDB file :
Tito_4JLK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4JLK-query.scw
PDB file :
Tito_Scwrl_4JLK.pdb
: