Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
GSHMLEMRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIKATK
1GX1 Chain:C ((3-157))
-------RIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPK-LPHIPQ-RVFIAEDLGCH-DDVNVKATTTEKLGFTGRGEGIACEAVALLIK---
General information:
TITO was launched using:
RESULT:
Template:
1GX1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -73941 for 1267 contacts (-58.4/contact) +
2D Compatibility (PS) -16968 + (NN) -11137 + (LL) 1424
1D Compatibility (HY) -11600 + (ID) 5250
Total energy: -117472.0 ( -92.72 by residue)
QMean score : 0.560
(partial model without unconserved sides chains):
PDB file :
Tito_1GX1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GX1-query.scw
PDB file :
Tito_Scwrl_1GX1.pdb
: