Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MDAPWGAGERWLHGAAVDRSGVSLGPPPTPQVNQGTLGPQVAPVAAGEVVKTAGGVCKFSGQRLSWWQAQESCEQQ-FGHLALQPPDG-------VLASRLRDP-----VWVGQREAPLRRPPQRRARTTAVLVFDERTADRAARLRSPLPELAALTACTHVQWDCASPDPAALFSVAAPALPNALQLRAFAEPGGVVRAALVVRGQHAPFLAAFRADGRWHH---VCATWEQRGGRWALFSDGRRRAGARGLGAGHPVPSGGILVLGQDQDSLGGGFSVRHALSGNLTDFHLWARAL---------SPAQLHRARACAPPSEGLLFRWDPGALDVTPSLLPTVWVRLLCPVPSEECPTWNPGPRSEGSELCLEPQPFLCCYRTEPYRRLQDAQSWPGQDVISRVNALANDIVLLPDPLSEVHGALSPAEASSFLGLLEHVLAMEMAPLGPAALLAVVRFLK------RVVALGAGDPELL--LTGPWEQLSQGVVSVASLVLEEQVADTWLSLREVIGGPMALVASVQRLAPLLSTSMTSERPRMRIQHRHAGLSGVTVIHSWFTSRVFQHTLEGPDL-EPQAPASSEEANRVQRFLSTQV-GSAIISSEVWDVT--GEVNVAMT------FHLQHRAQSPLFPPHPPSPYTGGAWATTGCSVAALY-------LDSTACFCNHSTSFAILLQIYEVQRGPEEESLLRTLSFVGCGVSFCALTTTFLLFLVAGVPKSERTTVHKNLTFSLASAEGFLMTSEWAKANEVACVAVTVAMH------FLFLVAFSWMLVEGLLLWRKVVAVSMHPGPGMRLYHATGWGV-PVGIVAVTLA---MLPHDYVAPGHCWLNVHTNAIWAFV---GPVLFVLTANTCILARVVMITVSSARRRAR------MLSPQPCLQQQIWTQIWATVKPVLVLL-------------------PVLGLTWLAGILVHLSPAWAYAAVGLNSIQGLYIFLVYAACNEEVRSALQRMAEKKVAEVLRALGVWGGAAKEHSLPFSVLPL--FLPPK-PSTPRHPLKAPA------------------------------------------------------------------------ |
4XC8 Chain:A ((42-1113)) | ---GPANKVRFVTAA-------SLFDGHDASIN-----------IMRRILQSQGCEVIHLGHNRSVQEVVTAALQEDVQGIAISSYQGGHVEYFKYMIDLLREHGGEHIQVFGGGGGVIVPDEIRELQAYGVARIYSPEDGQRMGLAGMITDMAQR-----CDIDLTRYAPTTLDTVVAGDRRALAQLITALENGK----------ADPELVSALHAQAKAAAVPVLGITGTGGAGKSSLTDELIRRFRLDQDDA----LSIAVISIDPSRRKSGGALLGDRIRMNAINHPNIFMRSLATREAGSEISQALPDVIAACKAARFDLVIVETSGIGQGDAAIVPHVDLSLYVMTPE-----FGAASQLEKIDM-LDFADFVAINKFDR-KGAQDAWRDVAKQVQRNREQWHSRAEDMP-----VYGTQASRFNDDGVTMLYQGLVGALGARGMSLKPGTLPNLEGRISTGQNVIVPPARSRYLAELADTVRAYHRRVVAQSKLARERQQLRAAHDMLQGAGHESAALETLASERDVSLGAVERKLLAMWPQMQQA-YSGDEYVE--IRTGLISTTLSGTKIRKVVLPRFEDEGEILKWLMRENVPGSFPYTAGVFAFKREGEDPTRMFAGEGDAFRTNRRFKLV-------SEGMEAKRLSTAFDSVTLYGEDPHERPDIYGKVGNSGVSIATLEDMKVLYDGF---DLTNPSTSVSMTIN-GPAPTILAMFMNTAIDQQIDRFRADNG--RDPTADEEAKIRAWVLQNVRGTVQADILKEDQGQNTCIFSTEFSLKVMGDIQEYFVHHQVRNFYSVSISGYHIAEAGANPISQLAFTLANGFTYVEAYLARGMHIDDFAPNLSFFFSNGMDPEYSVLGRVARRIWAVTMRDKYGANDRSQKLKYHIQTSGRSLHAQEIDFNDIRTTLQALIAIYDNCNSLHTNAYDEAITTPTAESVRRALAIQLIINREWGVAKCENPNQGSFLIEELTDLVEEAVLQEFERIAERGGVLGAMETGYQRGKIQEESLYYEQLKHDGTLPIIGVNTFRNPNGDPRSSEDEKQSQLHRLTEFHGAHQADAEAMLARLRQAVIDNRNVFAVLMDAVRVCSLGQITHALFEVGGQYRRNM |
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General information:
TITO was launched using:
| RESULT:
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Template: 4XC8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -386872 for 7234 contacts (-53.5/contact) +
2D Compatibility (PS) -95413 + (NN) -36441 + (LL) 3268
1D Compatibility (HY) -13200 + (ID) 8100
Total energy: -536758.0 ( -74.20 by residue)
QMean score : 0.183
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