Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKETRGYGGDAPFCTRLNHSYTGMWAPERSAEARGNLTRPPGSGEDCGSVSVAFPITMLLTGFVGNALAMLLVSRSYRRRESKRKKSFLLCIGWLALTDLVGQLLTTPVVIVVYLSKQRWEHIDPSGRLCTFFGLTMTVFGLSSLFIASAMAVERALAIRAPHWYASHMKTRATRAVLLGVWLAVLAFALLPVLGVGQYTVQWPGTWCFISTGRGGNGTSSSHNWGNLFFASAFAFLGL--LALTVTFSCNLATIKALVSRCRAKATASQSSAQW------GRITTETAIQLMGIMCVLSVCWSPLLIMMLKMIFNQTSVEHCKTHTEKQKECNFFLIAVRLASLNQILDPWVYLLLRKILLRK------FCQIR---YHTNNYASSSTSLPCQCSSTLMW--SDHLER- |
| 4XNV Chain:A ((38-382)) | ----------SFKCA------------------------LTKTGFQFYYLPAVY-ILVFIIGFLGNSVAIWMFVFHMKPWS-----GISVYMFNLALADFLY-VLTLPALIFYYFNKTDWIF---GDAMCKLQRFIFHVNLYGSILFLTCISAHRYSGVVYPKSL-GRLKKKNAICISVLVWLIVVVAISPILFYSGTGVRKNKTITCY--------DTTSDEYLRSYFIYSMCTTVAMFCVPLVLILGCYGLIVRALIYKMK-KYTCTVCGYIYNPEDGDPDNGVNPGTDFKDIVCPLC----------------GVGKDQFEEVEEPLRRKSIYLVIIVLTVFAVSYIPFHVMKTMNLRARLDFQTPAMCAFNDRVYATYQVTRGLASLNSCVNPILYFLAGDTFRRR |
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General information:
TITO was launched using:
| RESULT:
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Template: 4XNV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -215560 for 2321 contacts (-92.9/contact) +
2D Compatibility (PS) -33026 + (NN) -11493 + (LL) 3488
1D Compatibility (HY) -28000 + (ID) 2850
Total energy: -287441.0 ( -123.84 by residue)
QMean score : 0.235
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