Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVEVFLNNATKKIEGEY------HQSKETNAPVVLILHHHPQYGGSMDSKMIHSIYTSFIDNNFSALKINFRGVGKSTG-TFDKGIGELTDAAIAIDWLQEHNPSNVPIWIVGFSFGAWVAMQLTMRRPEIVGFIAL--SLPATKYDFSFLSPCPVPGLIIQSSNDTISEESDVTELANRLINSVKSDHMEYHIIGDTNH-FLRDKEEEVTQIIDNYVKLRLNSAAISSQMVKKEIRIKEYA
1IMJ Chain:A ((2-209))
AASVEQREGTIQVQGQALFFREALPGSGQARFSVLLLHG---IRFSSETWQNLGTLHRLAQAGYRAVAIDLPGLGHSKEAAAPAPIGELAPGSFLAAVVDALELG--PPVVISPSLSGMYSLPFLTAPGSQLPGFVPVAPICTDKINAANYASVKTPALIVYGDQD------PMGQTSFEHLKQLP--NHRVLIMKGAGHPCYLDKPEEWHTGLLDFLQGL---------------------
General information:
TITO was launched using:
RESULT:
Template:
1IMJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -131845 for 1614 contacts (-81.7/contact) +
2D Compatibility (PS) -22109 + (NN) -11253 + (LL) 2608
1D Compatibility (HY) -8400 + (ID) 1500
Total energy: -172499.0 ( -106.88 by residue)
QMean score : 0.452
(partial model without unconserved sides chains):
PDB file :
Tito_1IMJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1IMJ-query.scw
PDB file :
Tito_Scwrl_1IMJ.pdb
: