Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNRLIMNLVTKSAINFTAPAVLPNGEIVDDFCLSEHIKGKYAILLFYPLDFTFVCPTELISLNNRISEFAKRDVEVIGISVDSKFSHYQWRKTSVSNGGIGEISYTLVSDIKKSISRDYGV-LYDDSIALRATFVIDDKFIVRHQSINDMPLGRNMDEFIRIVDAIKHNEEHGEVCPAGWKKGKPAMQASDEGVTDYLNSYSEEL
3QPM Chain:E ((50-237))
--------ISKPAPQWEGTAVI-NGEF-KELKLSDY-RGKYLVFFFYPLDFTFVCPTEIIAFSDRVHEFRAINTEVVACSVDSQFTHLAWIITPRKQGGLGPMKIPLLSDLTHQISKDYGVYLEDQGHTLRGLFIIDEKGVLRQITMNDLPVGRSVDETLRLVQAFQYTDKHGEVCPAGWKPGSDTIIPDPSGKLKYFDK-----
General information:
TITO was launched using:
RESULT:
Template:
3QPM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -103118 for 1346 contacts (-76.6/contact) +
2D Compatibility (PS) -19726 + (NN) -673 + (LL) 1412
1D Compatibility (HY) -20400 + (ID) 4150
Total energy: -146655.0 ( -108.96 by residue)
QMean score : 0.477
(partial model without unconserved sides chains):
PDB file :
Tito_3QPM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3QPM-query.scw
PDB file :
Tito_Scwrl_3QPM.pdb
: