Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAIERTLSILKPDTVKNNIIGNINSYIEKSGLRIIAQKMMLLTKKQAELFYAIHKDRPFFGGLVEFMTSGPVIVQVLVGENAISKYRQIMGATDPKQADKGTIRGDFADDVNENRVHGSDSLENAHKEIAFFFAECELV
1KDN Chain:B ((9-144))
---ERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGLVSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAPGSIRGDFGVDVGRNIIHGSDSVESANREIALWFKPEELL
General information:
TITO was launched using:
RESULT:
Template:
1KDN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -58778 for 1057 contacts (-55.6/contact) +
2D Compatibility (PS) -14455 + (NN) -2189 + (LL) 556
1D Compatibility (HY) -10400 + (ID) 3150
Total energy: -88416.0 ( -83.65 by residue)
QMean score : 0.459
(partial model without unconserved sides chains):
PDB file :
Tito_1KDN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KDN-query.scw
PDB file :
Tito_Scwrl_1KDN.pdb
: