Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKSAVLNEHISKAIATIGHFDLLTINDAGMPIPNDHRRIDLAVTKNLPRFIDVLATVLEEMEIQKIYLAEEIKEHNPTQLQQIKQLISSEIEIIFIPHEEMKSNLAHPLNKGNIRTGETTPYSNIALESNVTF
1OGD Chain:A ((1-131))
MKKHGILNSHLAKILADLGHTDKIVIADAGLPVPDGVLKIDLSLKPGLPAFQDTAAVLAEEMAVEKVIAAAEIKASNQENAKFLENLF-SEQEIEYLSHEEFKLLTK--DAKAVIRTGEFTPYANCILQAGVLF
General information:
TITO was launched using:
RESULT:
Template:
1OGD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -58197 for 999 contacts (-58.3/contact) +
2D Compatibility (PS) -13928 + (NN) -4967 + (LL) -124
1D Compatibility (HY) -8800 + (ID) 2800
Total energy: -88816.0 ( -88.90 by residue)
QMean score : 0.630
(partial model without unconserved sides chains):
PDB file :
Tito_1OGD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1OGD-query.scw
PDB file :
Tito_Scwrl_1OGD.pdb
: