Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKRVITYGTYDLLHYGHIELLRRAREMGDYLIVALSTDEFNQIKHKKSYYDYEQRKMMLESIRYVDLVIPEKGWGQKEDDVEKFDVDVFVMGHDWEGEFDFLK-----DKCEVIYL--KR--TEGISTTKIKQELYGKDAK
3GLV Chain:A ((2-122))
MIRVMATGVFDILHLGHIHYLKESKKLGDELVVVVARDSTARNNGKIPIFDENSRLALISELKVVDRAILGH-EGDMMKTVIEVKPDIITLGYDQKFDEAELQSKINKLGITVKIVRISKYD-------------------
General information:
TITO was launched using:
RESULT:
Template:
3GLV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -59517 for 804 contacts (-74.0/contact) +
2D Compatibility (PS) -12683 + (NN) -5924 + (LL) 732
1D Compatibility (HY) -7200 + (ID) 1450
Total energy: -86042.0 ( -107.02 by residue)
QMean score : 0.567
(partial model without unconserved sides chains):
PDB file :
Tito_3GLV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GLV-query.scw
PDB file :
Tito_Scwrl_3GLV.pdb
: