Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEYLLSAGICMAIVSILLIGMAISNVSKGQYAKRFFFFATSCLVLTLVVVSSLSSSANASQTDNGVNRSGSEDPTVYSATSTKKLHKEPATLIKAIDGDTVKLMYKGQPMTFRLLLVDTPETKHPKKGVEKYGPEASAFTKKMVENANKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKPNNTHEQLLRKSEAQAKKEKLNIWSEDNADSGQ
4R8N Chain:A ((7-141))
-------------------------------------------------------------------------------------LHKEPATLIKAIDGDTIKLMYKGQPMTFRLLLVDTPETKHP---VEKYGPEASAFTKKMIENAKKVEVEFDKGQRTDKYGRGLAYVYADGKMVNEALVRQGLAKVAYVYKPNNTHEQHLRKSEAQAKKEKLNIWS--------
General information:
TITO was launched using:
RESULT:
Template:
4R8N.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -48722 for 1057 contacts (-46.1/contact) +
2D Compatibility (PS) -13929 + (NN) -2536 + (LL) 5924
1D Compatibility (HY) -15600 + (ID) 6300
Total energy: -81163.0 ( -76.79 by residue)
QMean score : 0.586
(partial model without unconserved sides chains):
PDB file :
Tito_4R8N.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4R8N-query.scw
PDB file :
Tito_Scwrl_4R8N.pdb
: