Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTLLYEGKAKRIFSTNQENELRVEYKDEVTAGNGAKKDTMAGKGRLNNQITSIIFKYLQENGIESHFIKQLSETEQLVKPVKIIPLEVVVRNIASGSITKRLGFENGEVFREPLVEFFYKNDALNDPLITDDHVKLLNIASDEDIEILKSKALKINNVLKQLMDAMNLKLVDFKIEFGKTETGQILLADEISPDTCRIWDKATNANFDKDVYRNNTGSLIETYQIFLNKLEDLK
2YWV Chain:A ((7-238))
QQLLYEGKAKKIYATDEPDVLWVEYKDSATAFNGEKKATIAGKGRLNNEISSLLFLKLREAGIANHFIEKLSPTEQLVRRVTIIPLEVVVRNVVAGSLAKRIGLEEGTPLEAPLVEFYYKNDDLGDPLLLEDHIFILKLASREEVAALKQAALAVNDVLRLHFAERNVRLIDFKLEFGRTADGAILLADEISPDTCRLWDAKTNEKLDKDVFRRDLGSLTDAYEVILQRLGG--
General information:
TITO was launched using:
RESULT:
Template:
2YWV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -72172 for 1827 contacts (-39.5/contact) +
2D Compatibility (PS) -24821 + (NN) -5671 + (LL) 240
1D Compatibility (HY) -26400 + (ID) 6500
Total energy: -135324.0 ( -74.07 by residue)
QMean score : 0.453
(partial model without unconserved sides chains):
PDB file :
Tito_2YWV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YWV-query.scw
PDB file :
Tito_Scwrl_2YWV.pdb
: