Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---MKIFICEDDPKQRENMVTIIKNYIMIEEKPMEIALATDNPYEVLEQAKNMNDIGCYFLDIQLSTDINGIKLGSEIRKHDPVGNIIFVTSHSELTYLTFVYKVAAMDFIFKD-DPAELRTRIIDCLETAHTRLQLLSKDNSVETIELKRGSNSVYVQYDDIMFFESSTKSHRLIAHLDNRQIEFYGNLKELSQLDDRFFRCHNSFVVNRHNIESIDSKERIVYFKNKEHCYASVRNVKKI
1S8N Chain:A ((11-200))
AVPRRVLIAEDEALIRMDLAEMLRE------EGYEIVGEAGDGQEAVELAELHK-PDLVIMDVKMP-RRDGIDAASEIASKRIA-PIVVLTAFSQRDLVERARDAGAMAYLVKPFSISDLIPAIELAVSRFREITALEGEVAT---LSERLETRKLVERAKGLLQTKHG---MTEPDAFKWIQRAAMDRRTTMKRVAEVVLETLG-------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1S8N.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -100019 for 1509 contacts (-66.3/contact) +
2D Compatibility (PS) -20117 + (NN) -7397 + (LL) 4092
1D Compatibility (HY) -4400 + (ID) 1250
Total energy: -129091.0 ( -85.55 by residue)
QMean score : 0.311
(partial model without unconserved sides chains):
PDB file :
Tito_1S8N.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S8N-query.scw
PDB file :
Tito_Scwrl_1S8N.pdb
: