Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKVHVFDHPLIQHKLSYIRDVNTGTKEFRELVDEVGMLMAYEVTRDLELQDVDIETPV-TKMTAKRLAG-KKLAIVPILRAGLGMTDGILSLVPAARVGHIGLYRDPETLKAVEYFAKLPQDITER--QIIVVDPMLATGASAIEAITSLKKRGAKNIRFMCLIAAPEGVEKMHEAHPDVDIYIAALDEKLNDKAYITPGLGDAGDRLFGTK
3G6W Chain:C ((3-216))
---LYVIDKPITLHILTQLRDKYTDQINFRKNLVRLGRILGYEISNTLDYEIVEVETPLGVKTKGVDITDLNNIVIINILRAAVPLVEGLLKAFPKARQGVIGASRV-KDMDVYIYYKKIP-DIRAKVDNVIIADPMIATASTMLKVLEEVVKANPKRIYIVSIISSEYGVNKILSKYPFIYLFTVAIDPELNNKGYILPGLGDAGDRAFG--
General information:
TITO was launched using:
RESULT:
Template:
3G6W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -180167 for 1635 contacts (-110.2/contact) +
2D Compatibility (PS) -21565 + (NN) -1945 + (LL) 340
1D Compatibility (HY) -18400 + (ID) 3500
Total energy: -225237.0 ( -137.76 by residue)
QMean score : 0.458
(partial model without unconserved sides chains):
PDB file :
Tito_3G6W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3G6W-query.scw
PDB file :
Tito_Scwrl_3G6W.pdb
: