Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -----------------------------------------------------------------------------------------------------------MRAKMKDIYLDVEKSIKDLQSIFKNADGRDEKLKR-FNQEALEVFQKLERESLKELESLKNNEEWENFTIAFYGETGAGKSTLIECLRMFFKEQSKVDQQERFKRLYSTYQYNHQNFILLDVPGIEG-SEKKVIDQISNATQKAHAIFMLPKRLILRKKEKK-GKG-ERLKKSKNSLIRKQRYGRFSTNRLIAQEP-------------------------------------------------------------------------------------------------------------------------- |
| 1MKY Chain:A ((2-439)) | ATVLIVGRPNVGKSTLFNKLVKDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLREFEREVKPELYSL--GFGEPIPVSAEHNINLDTMLETIIKKLEEKGLDLE-------SKPEITDAIKVAIVGRPNVGKSTLFNAILN--KERALVSPIPV----DDEVFIDGRKYVFVDTAGLEKYSNYRVVDSIEKAD---VVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYASYTTKVPSSAINSALQKVLAFTNLPRGLKIFFGVQVDIKPPTFLFFVNSIEKVKNPQKIFLRKLIRDYVFPFEGSPIFLKFKRSR |
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General information:
TITO was launched using:
| RESULT:
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Template: 1MKY.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 2690 for 1033 contacts (2.6/contact) +
2D Compatibility (PS) -18633 + (NN) -7459 + (LL) 2104
1D Compatibility (HY) -7200 + (ID) 1350
Total energy: -29848.0 ( -28.89 by residue)
QMean score : 0.410
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