Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRYQNMFETLKKHKKMAFIPFVTLGDPNYELSFEIVKTLIISGVSALELGLAFSDPVADGTTIQASHLRALKHASMAK-NFQLLKKIRGYNHDIPIGLLAYANLIFSYGVDGFYAQAKECGVDSVLIADMPLIEKELVIKSAQKHQIKQIFIASPNASSKDLEQVATHSQGYIYTLARSGVTGASHTLENDASAIIKTLKTFSSTPALLGFGISKKEHITNAKGMGADGVICGSALVKIIEENLNNEDAMLEKIKGFVGGMIS
3NAV Chain:A ((6-265))
-RYQALFQRLSAAQQGAFVPFVTIGDPNPEQSLAIMQTLIDAGADALELGMPFSDPLADGPTIQGANLRALAAKTTPDICFELIAQIRARNPETPIGLLMYANLVYARGIDDFYQRCQKAGVDSVLIADVPTNESQPFVAAAEKFGIQPIFIAPPTASDETLRAVAQLGKGYTYLLSRA--------ANMPVHALLERLQQFDAPPALLGFGISEPAQVKQAIEAGAAGAISGSAVVKIIETHLDNPAKQLTELANFTQAMKK
General information:
TITO was launched using:
RESULT:
Template:
3NAV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -188728 for 2141 contacts (-88.1/contact) +
2D Compatibility (PS) -27528 + (NN) -14879 + (LL) 320
1D Compatibility (HY) -20400 + (ID) 5900
Total energy: -257115.0 ( -120.09 by residue)
QMean score : 0.644
(partial model without unconserved sides chains):
PDB file :
Tito_3NAV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3NAV-query.scw
PDB file :
Tito_Scwrl_3NAV.pdb
: