Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MPNLENLDWKNLGFSYIKTDFRFIATYKNGSWSQGELVSENALQLSEGSPVLHYGQACFEGLKAYRSQKGKALLFRPLENAKRLQTSCERLLMPKVSEELFLKACAEVIKANQKWLAPYKSGASLYLRPFVIGVGDNLGV-KPASEYLFIVFCAPVGAYFKGGIEKGGARFITTAFDRAAPKGTGGVKVGGNYAASLLAHKIATEQGYDDCIYLDPTTHTKIEEVGAANFFGI-THDDAFITPHSPS----ILPSVTRKSLMVLAKEHLKLKVEEREILIDEL------GAFKEAGACGTAAIITPIKEIAHNNKSY---SFEAPGNITKQLYDLLLSIQQGEQEAPKDWIFEVG |
1EKV Chain:B ((28-365)) | -----------LVFGKTFTDHMLMVEWNDKGWGQPRIQPFQNLTLHPASSSLHYSLQLFEGMKAFKGKDQQVRLFRPWLNMDRMLRSAMRLCLPSFDKLELLECIRRLIEVDKDWV-PDAAGTSLYVRPVLIGNEPSLGVSQPRRALLFVILC-PVGAYFPGGSVTPVSLLADPAFIRAWVGGVGNYKLGGNYGPTVLVQQEALKRGCEQVLWLYGPDH-QLTEVGTMNIFVYWTHEDGVLELVTPPLNGVILPGVVRQSLLDMAQTWGEFRVVERTITMKQLLRALEEGRVREVFGSGTACQVCPVHRILYKDRNLHIPTMENGPELILRFQKELKEIQYGIRA--HEWMFPV- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1EKV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -144102 for 2608 contacts (-55.3/contact) +
2D Compatibility (PS) -34672 + (NN) -12132 + (LL) 600
1D Compatibility (HY) -28400 + (ID) 5350
Total energy: -224056.0 ( -85.91 by residue)
QMean score : 0.467
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