Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | LATGIGTAKMILCGEHAVVYGEPAISVPFTQAVVTTNVET-SI---KTKFSSAFFS-----GDL----------DDMPDFLAGIKALVVDVLNE--------I--GNGECVSIHVVSGVPIGRGLGSSAAVATSIARGLYKYF--NQELDSKKLLAIVNAAEKIAHGNASGVDAITVVSEK---PVWYERD--RKLEIMHFP----KKITFVVADTGVPSETRD------------A---VK----------------------DVQVLYKE---------NQ-------------------------------------------VEI--------------GKIIHQLG------DISREIKTHLEGDA-------DTVKIGAAMNKAQSYLET-LTVSDSSLEKLIKVARSNGADGAKLTGGGRGGCIIAVAKNQE--IAEQITKALHNAGAAQEWIFTIGEGSYESDSHRTHECGAN |
| 3V2U Chain:C ((40-486)) | -FIARSPGRVNLIGEHIDYCDFSVLPLAIDVDM-LCAVKILDEKNPSITLTNADPKFAQRKFDLPLDGSYMAIDPSVSEWSNYFKCGLHVAHSYLKKIAPERFNNTPLVGAQIFCQSDIPTGGGLSSAFTCAAALAT-IRANMGKNFDISKKDLTRITAVAEHYVGVNNGGMDQATSVYGEEDHALYVEFRPKLKATPFKFPQLKNHEISFVIANTLVKSNKFETAPTNYNLRVIEVTVAANALATRYSVALPSHKDNSNSERGNLRDFMDAYYARYENQAQPWNGDIGTGIERLLKMLQLVEESFSRKKSGFTVHEASTALNCSREEFTRDYLTTFPVRFQVLKLYQRAKHVYSESLRVLKALKMMT-SATFHTDEDFFTDFGRLMNESQASCDKLYECSCIETNQICSIALANGSFGSRLTGAGWGGCTIHLVPSGANGNVEQVRKALI------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 3V2U.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -121358 for 2382 contacts (-50.9/contact) +
2D Compatibility (PS) -30902 + (NN) -10391 + (LL) 1264
1D Compatibility (HY) -11200 + (ID) 3250
Total energy: -175837.0 ( -73.82 by residue)
QMean score : 0.506
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