Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | VDNNFQDRTPPQNIEAEQAVLGAIFLEPNALITASEILMPDDFYRTGHQIIFETMLDLNDHGKAVDVLTVYEALAAKGNLEDAGGLPYLTELSGAVPTAANLEYYAHIIEDKALLRRLIRTATQIATDGYSREDELDMLMDEAEKSILEVSQRKNVGAFKNIKDVLVKTYDDIEILHNRKGDITGIPTGFNELDKMTAGFQRNDLIIVAARPSVGKTAFALNIAQNVATKTDENVAIFSLEMGAEQLVMRMLCAEGNINAQNLRTG--ALTSDDWQKLTIAMGTLSNSGIYIDDTPGVRVNEIRSKCRRLKQET--GLGMIVIDYLQLIAGSGRGGENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYREDYYDREGENDGTIEIIIAKQRNGPVGDVKLAFVKEYNKFVNLEVRYDDAMA |
3BGW Chain:A ((12-436)) | ------------NEYAEQAVLGSILTEPELIKEC--PLTPEHFSPGKHFNIYFTMQDLDRKGQSVDFTSIAARVGEK--LPQLGGFGYLTELAASVASTTTFKQHCQTVSEYFQKRKAISIAQQIIENVN------VKPIQEAVSELMEIEASGTDDDDGSIDEALVTVYEEIES---ADGNITGVPSGFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN-DDVVNLHSLEMGKKENIKRLIVTAGSINAQKIKAARRDFASEDWGKLSMAIGEISNSNINIFDKAGQSVNYIWSKTRQTKRKNPGKRVIVMIDYLQLLEPAKA-NDSRTNQISQISRDLKKMARELDVVVIALSQLSRQVEQRQDKRPMLSDLRESGQLEQDADIIEFLYRDDYYDKESESKNIVEVIIAKHRDGPVGTVSLAFIKEYGNFVNLE-------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3BGW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -201430 for 3163 contacts (-63.7/contact) +
2D Compatibility (PS) -45161 + (NN) -20000 + (LL) 1076
1D Compatibility (HY) -31600 + (ID) 9500
Total energy: -306615.0 ( -96.94 by residue)
QMean score : 0.473
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