Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ------------------VITNQRDIDKYY-------DMLVEKNSNY---------EGVFFVGVKTTGILCR--PTCPAKKPLKENCEFFST--AKEALLASYRP----CKRCEPLSNPTKLSPAVKLLVDAIE-----------KNPEKKW-------TDKDFDDL---SISANTARRQF----KKQFGMTFIEYARSRRLGLAFKHIRGGN--SIINAQLDSGYESGNGFRDAFSKTMGEVPHKSKDITILYSAWLETKLGSMLAISDDDSLLLLEFVDRKGLETEIKKLRM-RLNAAITPEKTIIIQQIEAELAQYFNGE-----------LIDFKTP---IRYIGSDFQENVWEELRRIP--IGETISYKG----------LAEKLGRSTASRAVARANGANQL--------SLIVPCHRVINTNGALGGYGGGLARKEWLIKHEKMVPK----------------------------- |
| 4U1F Chain:A ((17-496)) | PSSSLKSWLMDDKVRDQFVLQDDVKTSVFWNSMFNEEDSLVESRENWSTNYVRFSPKGTYLFSYHQQGVTAWGGPNFDRLRRFYHPDVRNSSVSPNEKYLVTFSTEPIIVEEDNEFSPFTKKNEGHQLCIWDIASGLLMATFPVIKSPYLKWPLVRWSYNDKYCARMVGDSLIVHDATKNFMPLEAKALKPSGIRDFSFAPEGVKLQPFRNGDEPSVLLAYWTP--ETNN---SACTATIAEVPRGRVLKTVNLVQVSNVTLHWQ---NQAEFLCFNVERHTKSGKTQFSNLQICRLTERDIPVEKVELKDSVFEFGWEPHGNRFVTISVHEVADMNYAIPANTIRFYAPE-TKKRWSLVKEIPKTFANTVSWSPAGRFVVVGALVGPNMRRSDLQFYDMDYPGEKNINDNNDVSASLKDVAHPTYSAATNITWDPSGRYVTAWSSSLKHKVEHGYKIFNIAGNLVKEDIIAGFKNFAWRPRP |
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General information:
TITO was launched using:
| RESULT:
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Template: 4U1F.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 15792 for 2132 contacts (7.4/contact) +
2D Compatibility (PS) -34641 + (NN) 4478 + (LL) 636
1D Compatibility (HY) -12800 + (ID) 3400
Total energy: -29935.0 ( -14.04 by residue)
QMean score : 0.127
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