Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTMENSSNVAQSSKWKLPIMIAGFVIVVALVFYFVFEGTKNDITIVNAGEKIESRTHAKTVSEALDEAGIK-VSERDEIAPGKNAEIKDGMEIKYLPARQITINDNGTKKDVWSTKANV-AD-LLKDENITTRPQDVLNVALDTKLKNGLEVNINRAIQLSLQNGAKKDTVWTTKTKVSDLLAEKNIKLDQDDRVSPAKDSNLKEKMTVEVTYVNSKAEKKNEQVKFETVYKEDDSLNK-GVEKVVQEGKNGKKVVEYKVTFENGKEKKRDVIKENVTSNKTDKVVVRGTKEKVVATPVSNVSTSSATSSSSSSASSTPSGGKTYKMESTAYSGGGTTAYGINLSANPGLKVIAVDPRI---IPLGSKVWVEGYGEAIAGDTGGAIKGNI-VDVYFPNESQCYSWGRRMVTVKVLN |
| 3DF7 Chain:A ((1-305)) | ---------------SLKLFLFEFATC------------------------------GERIEDSTAVEGLAMFKSAFDGFKNYY---------------EITGFVRPEFSCLFTLPVDSMDSMEKYLEKS-----DAFLIIA------PEDDFLLYTLTKKAEKYCENLGS-----------SSRAIAVTSD-------KWELYKKLRGEVQVPQTSLRPLDCKFIIKPRTACIGFSDEVPDGHIAQEFIEG---INLSVSLAVGEDVKCLSVNEQIINN--------FRYAGAVVPARISDEVKREVVEEAVRAVECV--------------EGLNGYVGVDIVYSDQPYVIEINARLTTPVVAFSRAYGASVADLLAGGEVKHVR-RQMVRKSKSAEKPYVSVGDYTLEIIDLD |
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General information:
TITO was launched using:
| RESULT:
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Template: 3DF7.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 53008 for 2455 contacts (21.6/contact) +
2D Compatibility (PS) -31515 + (NN) -4037 + (LL) 7552
1D Compatibility (HY) -5600 + (ID) 1800
Total energy: 17608.0 ( 7.17 by residue)
QMean score : 0.134
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