Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNIQIVTVGKLKEKYLVQGIAEYLKRLSAYAKVTIVEVPDEKAPEVLSDAEMKQVKDKEGARILAKIPDDAYVIALAIDGKMKSSEEFAADLDKLATYGKSKVTFVIGG-SLGLSEAVLKRSNERISFGRLT----LPHQLMRLVLVEQVYRAFRIVRGEPYHK
2HA8 Chain:A ((100-175))
---------------------------------------------------------------------GYTIIGVEQTAKSLDLTQY-----CF----PEKSLLLLGNEREGIPANLIQQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQQ----------
General information:
TITO was launched using:
RESULT:
Template:
2HA8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -41726 for 423 contacts (-98.6/contact) +
2D Compatibility (PS) -7852 + (NN) -4963 + (LL) 7188
1D Compatibility (HY) -3600 + (ID) 400
Total energy: -51353.0 ( -121.40 by residue)
QMean score : 0.441
(partial model without unconserved sides chains):
PDB file :
Tito_2HA8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2HA8-query.scw
PDB file :
Tito_Scwrl_2HA8.pdb
: