Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-MKNIMLVCNAGMSTGMLAK-KIEAASGNTLNVTAY--------------------------SESEYTDYLDGVDLVL-IGPQIRFLMPQIKQAVSVPVHAI-SPVKYGIMDGKGVYEDIQKLIGG----
1JF8 Chain:A ((2-131))
DKKTIYFISTGNSARSQMAEGWGKEILGEGWNVYSAGIETHGVNPKAIEAMKEVDIDISNHTSDLIDNDILKQSDLVVTLCSDADNNCPILPPNVKKEHWGFDDPAGKEWSEFQRVRDEIKLAIEKFKLR
General information:
TITO was launched using:
RESULT:
Template:
1JF8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -70405 for 672 contacts (-104.8/contact) +
2D Compatibility (PS) -10383 + (NN) -617 + (LL) 0
1D Compatibility (HY) -1200 + (ID) 900
Total energy: -83505.0 ( -124.26 by residue)
QMean score : 0.296
(partial model without unconserved sides chains):
PDB file :
Tito_1JF8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JF8-query.scw
PDB file :
Tito_Scwrl_1JF8.pdb
: