Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--LRKSRWLLILLLLIVLVALSACEDSGNGDISGAPAKMEKQHFPPTDTKKGWIELLATDGISSQDNLPCVYEEAESVEKLEVHMKELSTASLTYIYIDGHIVQMEQGGDELSFQIQLSKTELRKGIHELAVVQYQENNPETKKVEFLKRANYEVKQIKND
3RNV Chain:A ((336-458))
MYIAKEGYCYINIFLAMLVNVK------------------------ESQAKEFTKVVRDKLVGELGKWPTLLDVATACYFLKVFYPDVANAELPRMLVDH---------KTKIIHVVDSYGSLSTGYHVLKTNTVEQLIKFTRCNLESSLKHYRVG-----
General information:
TITO was launched using:
RESULT:
Template:
3RNV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -58281 for 871 contacts (-66.9/contact) +
2D Compatibility (PS) -12426 + (NN) -372 + (LL) 1188
1D Compatibility (HY) -9600 + (ID) 1050
Total energy: -80541.0 ( -92.47 by residue)
QMean score : 0.291
(partial model without unconserved sides chains):
PDB file :
Tito_3RNV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3RNV-query.scw
PDB file :
Tito_Scwrl_3RNV.pdb
: