Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQYKIKEMPLEELEPKVVEGLLEHKERLGY-NIPKK-DTEYIGFAALSEVGEMVGGVTAKISYGELHVSLLSVDPSTQGSGVGTELMAQIERYGRANSCHHISLTT--FSYQAPEFYRKCGFTELGRVKDFPIKG---EEKYFFIKYL
2CNT Chain:A ((1-144))
-MNTISILSTTDLPAAWQIEQRAHAFPWSEKTFFGNQGERYLNLKL-TADDRMAAFAITQVVLDEATLFNIAVDPDFQRRGLGRMLLEHLIDELETRGVVTLWLEVRASNAAAIALYESLGFNEATIRRNYYPTAQGHEDAIIMAL--
General information:
TITO was launched using:
RESULT:
Template:
2CNT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -37882 for 978 contacts (-38.7/contact) +
2D Compatibility (PS) -14449 + (NN) -1539 + (LL) 652
1D Compatibility (HY) -4800 + (ID) 1000
Total energy: -59018.0 ( -60.35 by residue)
QMean score : 0.497
(partial model without unconserved sides chains):
PDB file :
Tito_2CNT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2CNT-query.scw
PDB file :
Tito_Scwrl_2CNT.pdb
: