Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNKVVVKNVTFGEGAPKICVPMVGKTVAALKEEAEMLQTIDLDVVEWRVDFFEDVKDLAKVEAALGEIRAILPETPILFTFRSAKEGGELAVSDEFYFELNETLAGTGKIDLVDVELFNEEADVLRLIETAHKNNVKVVMSNHDFDKTPAKEEIVSRLTRMEALGADLPKIAVMPKSAGDVLTLLDATNTVFEK-ANQPIITMSMAGTGVISRLAGEVFGSAMTFGAAKKASAPGQIDVNELRHVLDLLHKQF
4UIO Chain:A ((3-250))
--TVTVKNLIIGEGMPKIIVSLMGRDINSVKAEALAYREATFDILEWRVDHFMDIASTQSVLTAARVIRDAMPDIPLLFTFRSAKEGGEQTITTQHYLTLNRAAIDSGLVDMIDLELFTGDADVKATVDYAHAHNVYVVMSNHDFHQTPSAEEMVLRLRKMQALGADIPKIAVMPQSKHDVLTLLTATLEMQQHYADRPVITMSMAKEGVISRLAGEVFGSAATFGAVKQASAPGQIAVNDLRSVLMILH---
General information:
TITO was launched using:
RESULT:
Template:
4UIO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -138375 for 2161 contacts (-64.0/contact) +
2D Compatibility (PS) -27014 + (NN) -13043 + (LL) 444
1D Compatibility (HY) -24000 + (ID) 6800
Total energy: -208788.0 ( -96.62 by residue)
QMean score : 0.580
(partial model without unconserved sides chains):
PDB file :
Tito_4UIO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4UIO-query.scw
PDB file :
Tito_Scwrl_4UIO.pdb
: