Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQIFPAIDLKNGQCVRLFQGDFSKKTVVNEDPIAQAKAFATDGATYLHIVDLDGALEGRPINLEVIQKMKITAKIPVQVGGGIRSMAQVDYYLESGIDRVIIGSAALTDPDFLRAAVQKYGAKIAAGIDAKN--G--FVATRGWLDVSQVSYLDLAKRMEKVGVETIIYTDISRDGTLTGPNLEQMANLKEHVKVNLIASGGVSSRADLEALA---QLGLYGAIAGKALYNHHISMSDIVEVEQIAY
2Y88 Chain:A ((3-242))
LILLPAVNVVEGRAVRLVQGKAGSQTEY-GSAVDAALGWQRDGAEWIHLVDLDAAFGR-GSNHELLAEVVGKLDVQVELSGGIRDDESLAAALATGCARVNVGTAALENPQWCARVIGEHGDQVAVGLDVQIIDGEHRLRGRGWETDG-GDLWDVLERLDSEGCSRFVVTDITKDGTLGGPNLDLLAGVADRTDAPVIASGGVSSLDDLRAIATLTHRGVEGAIVGKALYARRFTLPQALAAV----
General information:
TITO was launched using:
RESULT:
Template:
2Y88.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -142014 for 2104 contacts (-67.5/contact) +
2D Compatibility (PS) -25645 + (NN) -10306 + (LL) 700
1D Compatibility (HY) -16000 + (ID) 3950
Total energy: -197215.0 ( -93.73 by residue)
QMean score : 0.594
(partial model without unconserved sides chains):
PDB file :
Tito_2Y88.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2Y88-query.scw
PDB file :
Tito_Scwrl_2Y88.pdb
: