Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-------------------------------------------------------------------MVFPKKLVASIAVFISLGFIYFRVSTAVAFENTSSASLLPSTGDAFSVWPIVIGVVL----VALAVVLFIKKKI------------
1VCP Chain:A ((1-149))
CIFEVKHEGKVTGYACLVGDKVMKPAHVKGVIDNADLAKLAFKKSSKYDLECAQIPVHMRSDASKYTHEKPEGHYNWHHGAVQYSGGRFTIPTGAGKPGDSGRPIFDNKG---RVVAIVLGGANEGSRTALSVVTWNK-DMVTRVTPEGSEEW
General information:
TITO was launched using:
RESULT:
Template:
1VCP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -78843 for 425 contacts (-185.5/contact) +
2D Compatibility (PS) -7162 + (NN) -295 + (LL) 264
1D Compatibility (HY) 400 + (ID) 700
Total energy: -86336.0 ( -203.14 by residue)
QMean score : 0.264
(partial model without unconserved sides chains):
PDB file :
Tito_1VCP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VCP-query.scw
PDB file :
Tito_Scwrl_1VCP.pdb
: