Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKEKVLWGYDEKTG---PEMWGHICSDFEIAHTGKAQSPVDIEQADVV--KLKPSTMKFYYKETDYTIRRIEQSVHVFPHDKEQGLRFNG--EYYPLVSFHAHIPAEHLLDGYIYPIEWHFVHE--KPDGTTLVMSAWMDIDNTNNIEFKNLPTYFPEV-FADFETEREITLDVNEFMPEERV---FYTYQGSRTTPPTVEGVTWIVLKNAKTLGQEDFTEFEKA--IGNTSRPVQDLNGREITFYN
1KOQ Chain:A ((2-223))
-----THWGYTG---HDSPESWGNLSEEFRLCSTGKNQSPVNIT--ETVSGKLPAIKVNYK-PS-MVDVENNGHTIQVNYP--EGGNTLTVNGRTYTLKQFHFHVPSENQIKGRTFPMEAHFVHLDE--NKQPLVLAVLYEAG-KTNGRLSSIWNVM--PMTA-GKVKLNQPFDASTLLPK---RLKYYRFAGSLTTPPCTEGVSWLVLKTYDHIDQAQAEKFTRAVG-SENNRPVQPLNARVVIE--
General information:
TITO was launched using:
RESULT:
Template:
1KOQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -99332 for 1577 contacts (-63.0/contact) +
2D Compatibility (PS) -22034 + (NN) -1837 + (LL) 1176
1D Compatibility (HY) -10400 + (ID) 3300
Total energy: -135727.0 ( -86.07 by residue)
QMean score : 0.354
(partial model without unconserved sides chains):
PDB file :
Tito_1KOQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KOQ-query.scw
PDB file :
Tito_Scwrl_1KOQ.pdb
: