Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSKDIDWSNLGFSYIKTDKRYISYWKDGEWDEGALTEDNTLHISEGSTALHYGQQCFEGLKAYRCKDGSINLFRPDRNAARIQKSCERLLMPHIPTEKFIDAVMQVVRANEEFVPPYGTGATLYLRPFVIGVGDNIGVHAAPEYIFSVFCSPVGPYFKGGMAPTNFIVSD--FDRAAPNGTGAAKVGGNYAASLLPGQAAKERNFGDCIYLDPATHTKIEEVGSANFFGI-TKDD---KFVT-PYSPSILPSITKYSLLYLAEHRLGLEAVEGDVYIDKL------DEFKEAGACGTAAVITPIGGIQTKD-DFHVFHSETEVGP-VTKRLFDELCGIQFGDVEAPEGWIYKVK |
| 1EKV Chain:B ((28-365)) | ---------LVFGKTFTDHMLMVEWNDKGWGQPRIQPFQNLTLHPASSSLHYSLQLFEGMKAFKGKDQQVRLFRPWLNMDRMLRSAMRLCLPSFDKLELLECIRRLIEVDKDWVPD-AAGTSLYVRPVLIGNEPSLGVSQPRRALLFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGGVGNYKLGGNYGPTVLVQQEALKRGCEQVLWLYGPDH-QLTEVGTMNIFVYWTHEDGVLELVTPPLNGVILPGVVRQSLLDMAQTWGEFRVVERTITMKQLLRALEEGRVREVFGSGTACQVCPVHRILYKDRNLHI--PTMENGPELILRFQKELKEIQYG-IRAHE-WMFPV- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1EKV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -148806 for 2634 contacts (-56.5/contact) +
2D Compatibility (PS) -34673 + (NN) -11795 + (LL) 480
1D Compatibility (HY) -29600 + (ID) 5400
Total energy: -229794.0 ( -87.24 by residue)
QMean score : 0.425
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