Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--MIYVIGIGPGDKRLMTGEALQAIEDAEVIVGYVTYIKLIKELIKDKEVVKTGMRREIDRCQEAVDIALTGKKVAVVSSGDAGIYGMAGLVLELAEK--SNPDLEVKVIPGITASIGAAAVLGAPIMHDFCHISLSDLMTPWEVIEKRLTHAAMADFVVCFYNPRSKGRANHLANAFQKMMEHKSGDTVVGIVKDVGRKEERKIITTMQGIDYELVDMTTVVIVGNKETYVKNGKMITPRGYSL
3NUT Chain:A ((8-247))
SGWVTVAGLGPGREDLVTPEVTAALAEATDIVGYIPYVARIAPR-EGLTLHPTDNRVELDRATHALEMAAEGRRVVVVSSGDPGVFAMASALFEALEAHPEHAGTEIRILPGITAMLAAAAAAGAPLGHDFCAINLSDNLKPFEILEKRLRHAARGDFAMAFYNPRSKSRPHQFTRVLEILREECEPGRLILFARAVTTPEQAISVVELRDATPEMADMRTVVLVGNAATRRVGPWVYTPR----
General information:
TITO was launched using:
RESULT:
Template:
3NUT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -200546 for 1895 contacts (-105.8/contact) +
2D Compatibility (PS) -26821 + (NN) -17939 + (LL) 272
1D Compatibility (HY) -13600 + (ID) 4550
Total energy: -263184.0 ( -138.88 by residue)
QMean score : 0.548
(partial model without unconserved sides chains):
PDB file :
Tito_3NUT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3NUT-query.scw
PDB file :
Tito_Scwrl_3NUT.pdb
: