Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VKQAIGFIDSGVGGLTVVREVLKQLPHEQVYYLGDTARCPYGPRDKEEVAKFTWEMTNFLVDRGIKMLVIACNTATAAALYDIREKLDIPVIGVIQPGSRAALKATRNNKIGVLGTLGTVESMAYPTALKGLNRRVEVDSLACPKFVSVVESGEYKSAIAKKVVAESLLPLKSTKIDTVILGCTHYPLLKPIIENFMGDGVAVINSGEETASEVSALLDYHNLLDATDEEIEHRFFTTGSTQIFKDIAKDWLNMPDMTVEHIKLGK
2DWU Chain:A ((7-260))
-HSVIGVLDSGVGGLTVASEIIRQLPKESICYIGDNERCPYGPRSVEEVQSFVFEMVEFLKQFPLKALVVACNTAAAATLAALQEALSIPVIGVIHPGARAAIKVTKKGKIGVIGTVGTIQSNMYEKALHELDTYLKVHSHACPTLATVVENRLEDTAYVTQQVKQALLPLTKEDIDTLILGCTHYPLLESYIKKELGEDVTIISSAEETAIELSTILQHKGILAD-NLNPKHRFFTTGSVSSFEHIAERWLGYQI----------
General information:
TITO was launched using:
RESULT:
Template:
2DWU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -191851 for 2286 contacts (-83.9/contact) +
2D Compatibility (PS) -27107 + (NN) -9323 + (LL) 1180
1D Compatibility (HY) -26800 + (ID) 6350
Total energy: -260251.0 ( -113.85 by residue)
QMean score : 0.617
(partial model without unconserved sides chains):
PDB file :
Tito_2DWU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2DWU-query.scw
PDB file :
Tito_Scwrl_2DWU.pdb
: