Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequence-----------------------------------------MNEEQLSKRLEKVASYITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEHIDVRKGNGLAVIEKKDVIDTIVIAGMGGALIRTILEEGAAKLAGVTKLILQPNIAAWQLREWSEQNNWLITSEAILREDNKIYEIMVLAPSKKPVAWTKQEIFFGPCLLKDQSAIFKSKWRHEANTWQNIIQTISNNQPVSPENQAKIRELEHKIALVEDVLK-----------------------------------------------------------------------------------------------------------
4Y2H Chain:B ((1-352))SIAAEREAALERPRRTKRERDQLYYECYSDVSVHEEMIADRVRTDAYRLGILRNWAAL-RGKTVLDVGAGTGILSIFCAQAG-ARRVYAVEA-SAIWQQAREVVRFNGLEDRVHVLPGP-VETVELPEQVDAIVSEWMGYGLLHESM----------------LSSVLHARTKWLKEGGLLLPASAEL----FIAPISDQMLEWRLGFWSQVKQHYGV----DMSCLEGFATRCLMGHSEIVVQGLSGEDVLA--RPQRFAQLELSRAGLEQELEAGVGGRFRCSCYGSAPMHGFAIWFQVTFPGGESEKPLVLSTSPFHPATHWKQALLYLNEPVQVEQDTDVSGEITLLPSRDNPRRLRVLLRYKVGDQEEKTKDFAMED


General information:
TITO was launched using:
RESULT:

Template: 4Y2H.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -57073 for 1432 contacts (-39.9/contact) +
2D Compatibility (PS) -21224 + (NN) -4882 + (LL) 2128
1D Compatibility (HY) -6800 + (ID) 2000
Total energy: -89851.0 ( -62.75 by residue)
QMean score : 0.269

(partial model without unconserved sides chains):
PDB file : Tito_4Y2H.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4Y2H-query.scw
PDB file : Tito_Scwrl_4Y2H.pdb: