Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | LEKYVVIGNPIRHSLSPAMQNRIFQELGMNAEYNSVLIEEDAFETEIKKLMDSGVRGFNITTPFKERILPFLDELDNLAAASGAVNTVLKKED--KWYGFNTDGKGYLEGLEE-IRSITEDDSILITGAGGASKAIYL-----------ALSTHTDAKITVANRTTEKAIEMTK--------DNNNHHAITLEEAEKQLADFTIIIQTTSIGLEASKNKSPISLANVKQGTICSDIIYNPAETAFLKEAKKNGAITQNGLPMFVNQGALAFEIWTGIKPERSLMKEAVLEQLGGN |
2GPT Chain:A ((237-506)) | ---YGIIGKPVSHSKSPIVHNQAFKSVDFNGVYVHLLV--DNLVSFLQAYSSSDFAGFSCTIPHKEAALQCCDEVDPLAKSIGAVNTILRRKSDGKLLGYNTDCIGSISAIEDGL-------------------TVVVIGAGGAGKALAYGAKEKGAKVVIANRTYER--ELAEAIGALSLTDLDNY------------EDGMVLANTTSMGMQPNVEETPISKDALKHYALVFDAVYTPRITRLLREAEESGAITVSGSEMFVRQAYEQFEIFTGLPAPKEL------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 2GPT.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -89495 for 1795 contacts (-49.9/contact) +
2D Compatibility (PS) -23634 + (NN) -7546 + (LL) 3896
1D Compatibility (HY) -18000 + (ID) 4050
Total energy: -138829.0 ( -77.34 by residue)
QMean score : 0.453
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