Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAVPFRRTSKAKKRKRRTHVKLQLPGMNECSNCGEYRLSHHVCPECGQYDGKDVANS
3PIP Chain:Z ((6-57))
--VPKKKTSKSKRDMRRSHHALTAPNLTECPQCHGKKLSHHICPNCGYYDGRQV---
General information:
TITO was launched using:
RESULT:
Template:
3PIP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 5261 for 236 contacts (22.3/contact) +
2D Compatibility (PS) -5549 + (NN) -3459 + (LL) 388
1D Compatibility (HY) -2800 + (ID) 1300
Total energy: -7459.0 ( -31.61 by residue)
QMean score : 0.660
(partial model without unconserved sides chains):
PDB file :
Tito_3PIP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3PIP-query.scw
PDB file :
Tito_Scwrl_3PIP.pdb
: