Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTSIEIKSPEEFQAHINGEELVYVDYWKDNCPNCKMLDLSFAEFKNSEIASKVKVLKVKLEEMGENFFFDRDVQQTPTLVLYKGGEEIHRLNGFIPPNKIEEAVSLNA
1NSW Chain:A ((5-102))
------LTDANFQQAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHA-DKVTVAKLNVDEN-PETTSQFGIMSIPTLILFKGGRPVKQLIGYQPKEQLEAQLAD--
General information:
TITO was launched using:
RESULT:
Template:
1NSW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -43450 for 699 contacts (-62.2/contact) +
2D Compatibility (PS) -10296 + (NN) -2700 + (LL) 780
1D Compatibility (HY) -6800 + (ID) 1450
Total energy: -63916.0 ( -91.44 by residue)
QMean score : 0.654
(partial model without unconserved sides chains):
PDB file :
Tito_1NSW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NSW-query.scw
PDB file :
Tito_Scwrl_1NSW.pdb
: