Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | --MKNYLSLSEEVKQAKAEGKAIVALESTIISHGMPYPQNVEMARDVEQIIRDNGAVPATIALIDGKIKIGLSDEELELFAKSSNVAKVSRRD------IGYLIATKQLGATTVAATMICAELAEIGIFVTGGIGGVHRGAETTMDVSADLEELAKTNVAVVCAGAKSILDLNLTMEYLETKGVPVIGYQTDVLPAFYTRSSDVELTL-RADTPEVIAESLKAKWDLQIEGGAVITNPIPEEFAMDEKVIN-DVIQTALKEAEENHIHGKDVTPFLLGKVKELTDGKSLEANIEL-----VKHNALIGTQIAVAYQNI |
| 4BVA Chain:A ((24-334)) | KRAPAFLSAEEVQDHLRSSSLLIPPLEAALANFSKGPDGGVMQPVRTVVPVAKHRGFLGVMPAYSAA-EDALTTKLVTFY--ESHQASVLLFDPSNGSLLAVMDGNVITAKRTAAVSAIATKLLKPPGSDVLCILGAGVQAYSHYEIFTEQFSF--KEVRMWNRTRENAEKFASTVQ----GDVRVCSSVQEAVT-----GADVIITVTMATEPILFGEWVKPGAHINAVGASRPDWRELDDELMRQAVLYVDSREAALKESGDVLLSGADI-FAELGEVISGAKPAHCEKTTVFKSLGMAVEDLVAAKLVYDSWSSG |
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General information:
TITO was launched using:
| RESULT:
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Template: 4BVA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -5200 for 2525 contacts (-2.1/contact) +
2D Compatibility (PS) -30249 + (NN) -7451 + (LL) 1616
1D Compatibility (HY) -2800 + (ID) 2200
Total energy: -46284.0 ( -18.33 by residue)
QMean score : 0.235
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