Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VEIKQIKAKDTQDIRHRVLRPE---Q--PEENA----IYPN----------DDMEGTFHLGAFEKDVLLGVASFYPEKSTV-IMNPAQYRIRGVATERRMRLKGLGTALLAEGEAEIWTRGADIIWCNA---RIVAVGFYEKHGYRKVGKSF-VIPGIG-EHYLMKKVNPNKKVDQDN
1TIQ Chain:A ((3-173))
VKMKKCSREDLQTLQQLSIETFNDTFKEQNSPENMKAYLESAFNTEQLEKELSNMSSQFFFIYFDHEIAGYVKVNIDDAQSEEMGAESLEIERIYIKNSFQKHGLGKHLLNKAIEIALERNKKNIWLGVWEKNENAIAFYKKMGFVQTGAHSFYMGDEEQTDLIMAKTLIL-------
General information:
TITO was launched using:
RESULT:
Template:
1TIQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -26669 for 992 contacts (-26.9/contact) +
2D Compatibility (PS) -15284 + (NN) -297 + (LL) 208
1D Compatibility (HY) -6400 + (ID) 1150
Total energy: -49592.0 ( -49.99 by residue)
QMean score : 0.305
(partial model without unconserved sides chains):
PDB file :
Tito_1TIQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1TIQ-query.scw
PDB file :
Tito_Scwrl_1TIQ.pdb
: