Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPTNLIQ--LPGIGKKMVLMLNEI-----GIEEVADLRGRNPLELY--EDTCDKRGERMDPCVLYT-----YRCAVYVAETDEAEQDVDLRKWWNWKDKQHTNERNLKNE-
2K4N Chain:A ((1-111))
MNSEVIKEFLEDIGEDYIELENEIHLKPEVFYEVWKYVGEPELKTYVIEDEIVEPGEYDPPEMKYTNVKKVKIKKVYFETLDNVRVVTDYSEFQKILKKRGTKLEHHHHHH
General information:
TITO was launched using:
RESULT:
Template:
2K4N.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -6588 for 500 contacts (-13.2/contact) +
2D Compatibility (PS) -9960 + (NN) -1299 + (LL) 0
1D Compatibility (HY) -4800 + (ID) 1300
Total energy: -23947.0 ( -47.89 by residue)
QMean score : 0.223
(partial model without unconserved sides chains):
PDB file :
Tito_2K4N.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2K4N-query.scw
PDB file :
Tito_Scwrl_2K4N.pdb
: