Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--VILIIDHNDSFTYNLYQYFLELQEEVQVVSATSFSLEAFQQLAPEMVVLSPGPGSP---EDFPVSLALLGKI--QVPILGICLGHQIIGHFFGAKVVPANVPVHGKTSVIS---HTGEGLFADLEPAFQVTRYHSLVIDPTTVPVNLKVTAVT-EDGVIMGLVHATKPIHSVQFHPEAILSENGHAILKNFVRLGRNVK
1QDL Chain:B ((1-195))
MDLTLIIDNYDSFVYNIAQIVGELGSYPIVIRNDEISIKGIERIDPDRLIISPGPGTPEKREDIGVSLDVIKYLGKRTPILGVCLGHQAIGYAFGAKIRRARKVFHGKISNIILVNNSPLSLYYGIAKEFKATRYHSLVVD--EVHRPLIVDAISAEDNEIMAIHHEEYPIYGVQFHPESVGTSLGYKILYNFLNRV----
General information:
TITO was launched using:
RESULT:
Template:
1QDL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -169871 for 1626 contacts (-104.5/contact) +
2D Compatibility (PS) -20084 + (NN) -8140 + (LL) 188
1D Compatibility (HY) -16400 + (ID) 3950
Total energy: -218257.0 ( -134.23 by residue)
QMean score : 0.577
(partial model without unconserved sides chains):
PDB file :
Tito_1QDL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1QDL-query.scw
PDB file :
Tito_Scwrl_1QDL.pdb
: