Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--MKKILLVCAAGMSTSLLV-TKMKAHATSIG-EEIEIEALPVSEASNVVDKMDIVMLGPQVRYQKPQVDELVQGRIPVIVIDMKDYGMLNGKAVLEKAFAEIG
1VKR Chain:A ((375-471))
SHVRKIIVACDAGMGSSAMGAGVLRKKIQDAGLSQISVTNSAINNLPP---DVDLVITH---RDLTERAMRQVPQAQHISLTNFLDSGLYTSLTERLVAAQRH-
General information:
TITO was launched using:
RESULT:
Template:
1VKR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -60010 for 660 contacts (-90.9/contact) +
2D Compatibility (PS) -10001 + (NN) -1709 + (LL) 308
1D Compatibility (HY) -1600 + (ID) 800
Total energy: -73812.0 ( -111.84 by residue)
QMean score : 0.408
(partial model without unconserved sides chains):
PDB file :
Tito_1VKR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VKR-query.scw
PDB file :
Tito_Scwrl_1VKR.pdb
: