Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPHLSKEAFKKQIKNG--IIVSCQALPGEPLYTESGGVMPLLALAAQEAGAVGIRANSVRDIKEIQEVTNLPIIGIIKREYPPQEPFITATMTEVDQLASLDIAVIALDCTLRERHDGLSVVEFIQKIKRKYPEQLLMADISTFEEGKNAFEAGVDFVGTTLSG--YTDYSRQEEGPDIELLNKLCQAGIDVIAEGKIHTPKQANEINHIGVAGIVVGGAITRPKEIAERFISGLS
3Q58 Chain:A ((8-227))
------ARLEQSVHENGGLIVSCQPVPGSPMDKP--EIVAAMAQAAASAGAVAVRIEGIENLRTVRPHLSVPIIGIIKRDLTGSPVRITPYLQDVDALAQAGADIIAFDASFRSRPV--DIDSLLTRIRLH--GLLAMADCSTVNEGISCHQKGIEFI--GTTLSGYTGPITP-VEPDLAMVTQLSHAGCRVIAEGRYNTPALAANAIEHGAWAVTVGSAITRIEHICQWFSHAVK
General information:
TITO was launched using:
RESULT:
Template:
3Q58.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -140515 for 1821 contacts (-77.2/contact) +
2D Compatibility (PS) -23382 + (NN) -12893 + (LL) 64
1D Compatibility (HY) -14800 + (ID) 3500
Total energy: -195026.0 ( -107.10 by residue)
QMean score : 0.585
(partial model without unconserved sides chains):
PDB file :
Tito_3Q58.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3Q58-query.scw
PDB file :
Tito_Scwrl_3Q58.pdb
: