Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ---------------------------------------------------------------------MKQTLKLMFSFLLMLGTMFGISQTVLAQETHQLTIV-----------HLEARDIDRPNPQ-----LEIAPKEGTPIEGVLYQLYQ--LKSTEDGDLLAHWNSLTITELKKQAQQVFEATTNQQGKA--TFNQLPDGIYYGLAVKAGEKNRNVSAFLV------DLSEDKVIYPKIIWSTGELDL----------LKVGVDGDTKKPLAGVVFELY---EKNGRTPIRVKNGVHSQDI------DAAKHLETDSS--GHIRISGLIHG-DYVLKEIETQSGYQIGQAETAVTIEKSKTVTVTI-----------ENKKVPTPKVPSRGGLIPKTGEQQAMALVI----IGGILIALALRLLSKHRKHQNKD |
| 3CM8 Chain:A ((12-471)) | IEPFLKTTPRPLRLPDGPPCSQRSKFLLMDALKLSIEIPLYDAIKCMKTFFGWKEPNIVKPHEKGINPNYLLAWKQVLAELQDIENEEKIPKTKNMRKTSQLKWALGENMAPEKVDFEDCKDVSEPKPRSLASWIQSEFNKACELTDSSWIELDEIIASMRRNYFTAEVSHCRATEYIMKGVYINTALLNASCAAMDDFQLIP--MISKCRTKEGRRKTNLYGFIIKGRSHLRNDTDVVNFVSMEFSLTDPRLEPHKWEKYCVLEIG-DMLLRTAIGQVSRPMFLYVRTNGTSKIKMKWGMEMRRCLLQSLQQIESMIEAESSVKEKDMTKEFFENKSETWPIGESPKGMEEGSIGKVCRTLLAKSVFNSLYASPQLEGFSAESRKLLLIVQALRDNLEPGTFDLGGLYEAIEECLINDPWVLLNASWFNSFLTHALK- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3CM8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -11719 for 1883 contacts (-6.2/contact) +
2D Compatibility (PS) -31611 + (NN) -4957 + (LL) -132
1D Compatibility (HY) -9200 + (ID) 2750
Total energy: -60369.0 ( -32.06 by residue)
QMean score : 0.125
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