Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKQTKKEFILGLTIIITLTLLIMLIFLVMFNKSSNSKLKQTKDRRVLSTSTTRTSSSSHDQKIVEKSLEKKKMVMEQDMELMNAYRLYYDYAHLSLKEVVLAYMSEYGIEKNSVAFSYKNLKTGQRD-AMNDTQAMTAGSTYKLPLNMLVVDAVVKGKLSMEERFDITETDY-EYIGEHNNYVAAFSGAMSIDDMQKYSLVYSENTPAYALAERIGGMDSAYSKFGRYGQSKGDIKNIQ---------KNGNKVTTDYYIQVLDYLWKHR----KKYDSLITYLEEAF-PTDYYRALIPSDVVVAQKPGYV-REALNVGAIVK-EEV-PYIVAIYTAGLGGSTQEDSEINGVGLYQLEQLCFVINQWHRVNMN |
| 1N9B Chain:A ((3-262)) | ----------------------------------------------------------------------------------------------QPLEQIKLSESQL---SGRVGMIEMDLASGRTLTAWRADERFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSE--KH-LADGMTVGELCAAAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPASMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTGASERGARGIVALLGPNNKAERIVVIYLRDTPASMAERNQQ----IAGIGAALIEHWQR------ |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1N9B.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -98849 for 2032 contacts (-48.6/contact) +
2D Compatibility (PS) -25731 + (NN) -2153 + (LL) 9312
1D Compatibility (HY) -8400 + (ID) 2100
Total energy: -127921.0 ( -62.95 by residue)
QMean score : 0.363
|
|
|