Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRKKPIIIGVTGGSGGGKTSVSRAILSNFPDQ-------KITMIEHDSYYKD--QSHLTFEERVKTNYDHPLAFDTNLMIEQLNELIEGRPVDIPVYDYTKHTRSDRTIRQDPQDVIIVEGILVLEDQRLRDLMDIKLFVDTDDDIRIIRRIKRDMEERDRSLDSIIEQYTEVVKPMYHQFIEPTKRYADIVIPEGVSNIVAIDLINTKVASILNEAK
2UVQ Chain:A ((24-237))
---RPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRFYKVLTAEQKAKALKGQYNFDHPDAFDNDLMHRTLKNIVEGKTVEVPTYDFVTHSRLPETTVVYPADVVLFEGILVFYSQEIRDMFHLRLFVDTDSDVRLSRRVLRDVRD----LEQILTQYTTFVKPAFEEFCLPTKKYADVIIPRGVDNMVAINLIVQHIQDILNGDI
General information:
TITO was launched using:
RESULT:
Template:
2UVQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -79096 for 1526 contacts (-51.8/contact) +
2D Compatibility (PS) -22065 + (NN) -11342 + (LL) 468
1D Compatibility (HY) -22400 + (ID) 4200
Total energy: -138635.0 ( -90.85 by residue)
QMean score : 0.523
(partial model without unconserved sides chains):
PDB file :
Tito_2UVQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2UVQ-query.scw
PDB file :
Tito_Scwrl_2UVQ.pdb
: